Dominic Bess took five before rain and Quinton de Kock held England up.
Quinton De Kock scored an unbeaten 79 as South Africa thrashed India by nine wickets in the final Twenty20 international in Bangalore.
Proteas players Duanne Olivier, Quinton de Kock, Aiden Markram and Hashim Amla have made significant strides in the latest Test player rankings after the series at home against Pakistan.
Proteas coach Ottis Gibson has announced Quinton de Kock and JP Duminy as the respective stand-in captains for the remainder of the ODI series and one-off T20I in Sri Lanka.
AB de Villiers and Quinton de Kock are on track to be fit for the Proteas' first Test against Australia, starting on 1 March, while captain Faf du Plessis and Temba Bavuma are doubtful for the start of the series.